How intensive agriculture turned a wild plant into a pervasive weed

December 8, 2022

A 155-year-old waterhemp herbarium specimen from the Missouri Botanical Garden Herbarium

New research in Science is showing how the rise of modern agriculture has turned a North American native plant, common waterhemp, into a problematic agricultural weed.

An international team led by researchers at the University of British Columbia (UBC) compared 187 waterhemp samples from modern farms and neighbouring wetlands with more than 100 historical samples dating as far back as 1820 that had been stored in museums across North America. Much like the sequencing of ancient human and neanderthal remains has resolved key mysteries about human history, studying the plant’s genetic makeup over the last two centuries allowed the researchers to watch evolution in action across changing environments.  

“The genetic variants that help the plant do well in modern agricultural settings have risen to high frequencies remarkably quickly since agricultural intensification in the 1960s,” said first author Dr. Julia Kreiner, a postdoctoral researcher in UBC’s Department of Botany.

The researchers discovered hundreds of genes across the weed’s genome that aid its success on farms, with mutations in genes related to drought tolerance, rapid growth and resistance to herbicides appearing frequently. “The types of changes we’re imposing in agricultural environments are so strong that they have consequences in neighbouring habitats that we’d usually think were natural,” said Dr. Kreiner.

The findings could inform conservation efforts to preserve natural areas in landscapes dominated by agriculture. Reducing gene flow out of agricultural sites and choosing more isolated natural populations for protection could help limit the evolutionary influence of farms.

Common waterhemp is native to North America and was not always a problematic plant. Yet in recent years, the weed has become nearly impossible to eradicate from farms thanks to genetic adaptations including herbicide resistance.

“While waterhemp typically grows near lakes and streams, the genetic shifts that we’re seeing allow the plant to survive on drier land and to grow quickly to outcompete crops,” said co-author Dr. Sarah Otto, Killam University Professor at the University of British Columbia. “Waterhemp has basically evolved to become more of a weed given how strongly it’s been selected to thrive alongside human agricultural activities.”

Notably, five out of seven herbicide-resistant mutations found in current samples were absent from the historical samples. “Modern farms impose a strong filter determining which plant species and mutations can persist through time,” said Dr. Kreiner. “Sequencing the plant’s genes, herbicides stood out as one of the strongest agricultural filter determining which plants survive and which die.”

Waterhemp carrying any of the seven herbicide resistant mutations have produced an average of 1.2 times as many surviving offspring per year since 1960 compared to plants that don’t have the mutations.

Herbicide resistant mutations were also discovered in natural habitats, albeit at a lower frequency, which raises questions about the costs of these adaptations for plant life in non-agricultural settings. “In the absence of herbicide applications, being resistant can actually be costly to a plant, so the changes happening on the farms are impacting the fitness of the plant in the wild,” said Dr. Kreiner.

Agricultural practices have also reshaped where particular genetic variants are found across the landscape. Over the last 60 years, a weedy southwestern variety has made an increasing progression eastward across North America, spreading their genes into local populations as a result of their competitive edge in agricultural contexts.

 “These results highlight the enormous potential of studying historical genomes to understand plant adaptation on short timescales,” says Dr. Stephen Wright, co-author and Professor in Ecology and Evolutionary Biology at the University of Toronto. “Expanding this research across scales and species will broaden our understanding of how farming and climate change are driving rapid plant evolution.”

“Understanding the fate of these variants and how they affect plants in non-farm, ‘wild’ populations is an important next step for our work,” according to Professor John Stinchcombe of the University of Toronto, a coauthor on the study.


For more information, contact…

UBC Public Affairs

  • Plants
  • Botany

Musqueam First Nation land acknowledegement

UBC Science acknowledges that the UBC Point Grey campus is situated on the traditional, ancestral, and unceded territory of the xʷməθkʷəy̓əm.

Learn more: Musqueam First Nation

Faculty of Science

Office of the Dean, Earth Sciences Building
2178–2207 Main Mall
Vancouver, BC Canada
V6T 1Z4
UBC Crest The official logo of the University of British Columbia. Urgent Message An exclamation mark in a speech bubble. Arrow An arrow indicating direction. Arrow in Circle An arrow indicating direction. A bookmark An ribbon to indicate a special marker. Calendar A calendar. Caret An arrowhead indicating direction. Time A clock. Chats Two speech clouds. External link An arrow pointing up and to the right. Facebook The logo for the Facebook social media service. A Facemask The medical facemask. Information The letter 'i' in a circle. Instagram The logo for the Instagram social media service. Linkedin The logo for the LinkedIn social media service. Lock, closed A closed padlock. Lock, open An open padlock. Location Pin A map location pin. Mail An envelope. Mask A protective face mask. Menu Three horizontal lines indicating a menu. Minus A minus sign. Money A money bill. Telephone An antique telephone. Plus A plus symbol indicating more or the ability to add. RSS Curved lines indicating information transfer. Search A magnifying glass. Arrow indicating share action A directional arrow. Twitter The logo for the Twitter social media service. Youtube The logo for the YouTube video sharing service.